Dominant reaction pathways in high-dimensional systems.

نویسندگان

  • E Autieri
  • P Faccioli
  • M Sega
  • F Pederiva
  • H Orland
چکیده

This paper is devoted to the development of a theoretical and computational framework denominated dominant reaction pathways (DRPs) to efficiently sample the statistically significant thermally activated reaction pathways, in multidimensional systems. The DRP approach is consistently derived from the Langevin equation through a systematic expansion in the thermal energy, k(B)T. Its main advantage with respect to existing simulation techniques is that it provides a natural and rigorous framework to perform the path sampling using constant displacement steps, rather than constant time steps. In our previous work, we have shown how to obtain the set of most probable reaction pathways, i.e., the lowest order in the k(B)T expansion. In this work, we show how to compute the corrections to the leading order due to stochastic fluctuations around the most probable trajectories. We also discuss how to obtain predictions for the evolution of arbitrary observables and how to generate conformations, which are representative of the transition state ensemble. We illustrate how our method works in practice by studying the diffusion of a point particle in a two-dimensional funneled external potential.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Fluctuations in the ensemble of reaction pathways.

The dominant reaction pathway is a rigorous framework to microscopically compute the most probable trajectories, in nonequilibrium transitions. In the low-temperature regime, such dominant pathways encode the information about the reaction mechanism and can be used to estimate nonequilibrium averages of arbitrary observables. On the other hand, at sufficiently high temperatures, the stochastic ...

متن کامل

Developing 3 dimensional model for estimation of acoustic power in urban pathways in geo-spatial information system framework

Around the word, traffic growth is causing growing air and noise pollution. Noise levels in a given area are affected by traffic on the streets as well as effective factors, including existing infrastructure and industrial centers, and so on. The purpose of this research is to model and estimate the amount of acoustic emission in the streets of Tehran's third district, using the 3D spatial info...

متن کامل

O-16: Comparison of Pre-Antral Follicle Culture Development during 2 Dimensional and 3 Dimensional Culture Systems

Background: Setting up an in vitro follicle culture system that resembles in vivo ovary condition has high value in research. Additionally, expression evaluation of folliculogenesis involved genes could lead us to the designing of better culture system. Materials and Methods: ovaries of 12-day-old female NMRI mice were removed, 100-130 μm pre-antral follicles were mechanically isolated from fre...

متن کامل

High-performance three-dimensional maneuvers control in the area of spacecraft

Contemporary research is improving techniques to maneuvers control in the area of spacecraft. In the aspect of further development of investigations, a high-performance strategy of maneuvers control is proposed in the present research to be applicable to deal with a class of the aforementioned spacecrafts. In a word, the main subject behind the research is to realize a high-performance three-di...

متن کامل

یک روش مبتنی بر خوشه‌بندی سلسله‌مراتبی تقسیم‌کننده جهت شاخص‌گذاری اطلاعات تصویری

It is conventional to use multi-dimensional indexing structures to accelerate search operations in content-based image retrieval systems. Many efforts have been done in order to develop multi-dimensional indexing structures so far. In most practical applications of image retrieval, high-dimensional feature vectors are required, but current multi-dimensional indexing structures lose their effici...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • The Journal of chemical physics

دوره 130 6  شماره 

صفحات  -

تاریخ انتشار 2009